STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bcav_1104PFAM: Phosphotransferase enzyme family. (400 aa)    
Predicted Functional Partners:
Bcav_2128
PFAM: Phytanoyl-CoA dioxygenase (PhyH).
  
     0.596
Bcav_0473
PFAM: Glycosyl hydrolases family 43.
  
     0.537
Bcav_3725
PFAM: Bacterial regulatory protein, arsR family.
  
     0.509
ychF
GTP-binding protein YchF; ATPase that binds to both the 70S ribosome and the 50S ribosomal subunit in a nucleotide-independent manner.
       0.479
Bcav_1103
Protein of unknown function DUF195; PFAM: RmuC family.
       0.458
Bcav_3398
Glycoside hydrolase family 35; PFAM: Beta-galactosidase; Belongs to the glycosyl hydrolase 35 family.
  
     0.445
Bcav_4170
Conserved hypothetical protein.
  
     0.445
Bcav_1570
ATP-dependent nuclease subunit B-like protein.
  
     0.440
Bcav_0252
Putative phosphotransferase.
  
     0.419
Bcav_3575
PFAM: Uncharacterized protein conserved in bacteria (DUF2329).
  
     0.412
Your Current Organism:
Beutenbergia cavernae
NCBI taxonomy Id: 471853
Other names: B. cavernae DSM 12333, Beutenbergia cavernae DSM 12333, Beutenbergia cavernae str. DSM 12333, Beutenbergia cavernae strain DSM 12333
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.