STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bcav_1109PFAM: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily. (132 aa)    
Predicted Functional Partners:
Bcav_2834
PFAM: Bacterial extracellular solute-binding protein; TIGRFAM: Tat (twin-arginine translocation) pathway signal sequence.
  
     0.725
Bcav_0322
PFAM: Bacterial extracellular solute-binding protein.
  
     0.618
Bcav_0319
Conserved hypothetical protein.
  
     0.586
Bcav_0599
Hypothetical protein.
  
     0.521
Bcav_0935
PFAM: Phytanoyl-CoA dioxygenase (PhyH).
  
     0.511
Bcav_3337
Conserved hypothetical protein.
  
     0.507
Bcav_1108
Conserved hypothetical protein.
       0.502
Bcav_0330
Hypothetical protein; TIGRFAM: glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type; Tat (twin-arginine translocation) pathway signal sequence.
  
     0.465
Bcav_2843
Metallophosphoesterase; PFAM: Calcineurin-like phosphoesterase.
  
     0.464
Bcav_3793
PFAM: Bacterial extracellular solute-binding protein.
  
     0.452
Your Current Organism:
Beutenbergia cavernae
NCBI taxonomy Id: 471853
Other names: B. cavernae DSM 12333, Beutenbergia cavernae DSM 12333, Beutenbergia cavernae str. DSM 12333, Beutenbergia cavernae strain DSM 12333
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.