STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bcav_1212PFAM: Bacterial regulatory protein, arsR family. (212 aa)    
Predicted Functional Partners:
Bcav_1211
Hypothetical protein.
       0.773
Bcav_1213
PFAM: Major Facilitator Superfamily.
 
     0.706
Bcav_2967
PFAM: Bacterial regulatory protein, arsR family.
  
     0.578
Bcav_1920
GCN5-related protein N-acetyltransferase; PFAM: Acetyltransferase (GNAT) family.
  
     0.495
Bcav_0082
PFAM: Sugar-specific transcriptional regulator TrmB.
  
   
 0.477
Bcav_0517
GCN5-related protein N-acetyltransferase; PFAM: Acetyltransferase (GNAT) family.
  
     0.474
Bcav_1210
Transferase hexapeptide repeat containing protein.
       0.444
Bcav_2715
PFAM: Major Facilitator Superfamily.
 
     0.427
Bcav_2606
Hypothetical protein.
  
     0.425
Bcav_1925
GCN5-related protein N-acetyltransferase; PFAM: Acetyltransferase (GNAT) family.
  
     0.424
Your Current Organism:
Beutenbergia cavernae
NCBI taxonomy Id: 471853
Other names: B. cavernae DSM 12333, Beutenbergia cavernae DSM 12333, Beutenbergia cavernae str. DSM 12333, Beutenbergia cavernae strain DSM 12333
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.