STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bcav_1352Monosaccharide-transporting ATPase; PFAM: Branched-chain amino acid transport system / permease component; Belongs to the binding-protein-dependent transport system permease family. (345 aa)    
Predicted Functional Partners:
Bcav_1351
PFAM: ABC transporter.
 0.999
Bcav_1353
Periplasmic binding protein/LacI transcriptional regulator; PFAM: Periplasmic binding proteins and sugar binding domain of the LacI family.
 
 0.999
Bcav_2997
PFAM: ABC transporter.
 
 0.986
Bcav_2994
PFAM: ABC transporter.
 
 0.974
Bcav_2946
PFAM: ABC transporter.
 
     0.775
Bcav_1354
PFAM: Oxidoreductase family, C-terminal alpha/beta domain; Oxidoreductase family, NAD-binding Rossmann fold.
    0.688
Bcav_2998
Putative sugar ABC transporter.
 
   
 0.614
Bcav_1355
PFAM: AP endonuclease family 2 C terminus; Xylose isomerase-like TIM barrel.
 
    0.598
Bcav_1350
PFAM: ROK family.
  
    0.572
rbsK-2
Ribokinase; Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5-phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway.
 
  
 0.530
Your Current Organism:
Beutenbergia cavernae
NCBI taxonomy Id: 471853
Other names: B. cavernae DSM 12333, Beutenbergia cavernae DSM 12333, Beutenbergia cavernae str. DSM 12333, Beutenbergia cavernae strain DSM 12333
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