STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bcav_1514ABC-type sugar transport system periplasmic component; TIGRFAM: Tat (twin-arginine translocation) pathway signal sequence. (444 aa)    
Predicted Functional Partners:
Bcav_1515
PFAM: Binding-protein-dependent transport system inner membrane component.
  
   0.822
Bcav_1516
PFAM: Binding-protein-dependent transport system inner membrane component.
  
   0.822
Bcav_1513
Putative periplasmic protein.
  
    0.774
Bcav_1512
PFAM: Dihydrodipicolinate synthetase family; Belongs to the DapA family.
       0.773
Bcav_1517
PFAM: FCD domain; Bacterial regulatory proteins, gntR family.
       0.661
Bcav_1511
Transcriptional regulator, DeoR family; PFAM: DeoR-like helix-turn-helix domain; Bacterial regulatory proteins, deoR family.
       0.628
Bcav_0785
PFAM: ABC transporter; TOBE domain.
  
   0.403
Bcav_1098
PFAM: ABC transporter; Belongs to the ABC transporter superfamily.
  
   0.403
Bcav_2554
PFAM: TOBE domain; ABC transporter.
  
   0.403
Bcav_2845
PFAM: ABC transporter; TOBE domain.
  
   0.403
Your Current Organism:
Beutenbergia cavernae
NCBI taxonomy Id: 471853
Other names: B. cavernae DSM 12333, Beutenbergia cavernae DSM 12333, Beutenbergia cavernae str. DSM 12333, Beutenbergia cavernae strain DSM 12333
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.