STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bcav_1554Putative RNA polymerase, sigma-24 subunit, ECF subfamily; PFAM: Sigma-70 region 2; Sigma-70, region 4; TIGRFAM: RNA polymerase sigma factor, sigma-70 family. (411 aa)    
Predicted Functional Partners:
Bcav_1553
PFAM: YCII-related protein domain.
 
     0.946
Bcav_2256
PFAM: YCII-related protein domain.
 
     0.777
Bcav_3455
PFAM: YCII-related protein domain.
 
     0.774
Bcav_2210
PFAM: YCII-related protein domain.
 
     0.772
Bcav_4084
PFAM: YCII-related protein domain.
     0.742
Bcav_1702
PFAM: YCII-related protein domain.
 
     0.732
Bcav_1952
PFAM: YCII-related protein domain.
 
     0.673
Bcav_4128
PFAM: YCII-related protein domain.
 
     0.594
Bcav_2089
PFAM: YCII-related protein domain.
 
     0.538
Bcav_1552
Conserved hypothetical protein.
       0.535
Your Current Organism:
Beutenbergia cavernae
NCBI taxonomy Id: 471853
Other names: B. cavernae DSM 12333, Beutenbergia cavernae DSM 12333, Beutenbergia cavernae str. DSM 12333, Beutenbergia cavernae strain DSM 12333
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.