STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bcav_1593Conserved hypothetical protein. (219 aa)    
Predicted Functional Partners:
Bcav_1594
Cystathionine gamma-lyase; PFAM: Cys/Met metabolism PLP-dependent enzyme.
  
    0.686
Bcav_3934
Conserved hypothetical protein.
  
     0.540
Bcav_1591
PFAM: Glycosyl hydrolases family 2, sugar binding domain; Belongs to the glycosyl hydrolase 2 family.
       0.539
Bcav_1592
PFAM: Major Facilitator Superfamily.
       0.531
Bcav_1713
Putative lipoprotein.
  
     0.529
ddl
D-alanine/D-alanine ligase; Cell wall formation; Belongs to the D-alanine--D-alanine ligase family.
  
  
 0.528
Bcav_1126
PFAM: VanW like protein.
  
     0.522
Bcav_0843
PFAM: Domain of unknown function (DUF477).
 
 
   0.482
Bcav_0838
Conserved hypothetical protein.
  
     0.447
Bcav_0529
Conserved hypothetical protein.
 
     0.435
Your Current Organism:
Beutenbergia cavernae
NCBI taxonomy Id: 471853
Other names: B. cavernae DSM 12333, Beutenbergia cavernae DSM 12333, Beutenbergia cavernae str. DSM 12333, Beutenbergia cavernae strain DSM 12333
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.