STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bcav_1709PFAM: Binding-protein-dependent transport system inner membrane component. (325 aa)    
Predicted Functional Partners:
Bcav_1711
PFAM: Bacterial extracellular solute-binding protein.
 
  0.990
Bcav_1710
PFAM: Binding-protein-dependent transport system inner membrane component.
 
   0.958
Bcav_1708
PFAM: Bacterial extracellular solute-binding protein.
 
   0.860
Bcav_4196
PFAM: Binding-protein-dependent transport system inner membrane component.
 
   0.802
Bcav_0320
PFAM: Binding-protein-dependent transport system inner membrane component.
 
   0.801
Bcav_1712
PFAM: Protein of unknown function, DUF608.
 
     0.798
Bcav_3943
PFAM: Binding-protein-dependent transport system inner membrane component.
 
   0.794
Bcav_2832
PFAM: Binding-protein-dependent transport system inner membrane component.
 
   0.782
Bcav_0278
PFAM: Binding-protein-dependent transport system inner membrane component.
 
   0.781
Bcav_0312
PFAM: Binding-protein-dependent transport system inner membrane component.
 
   0.778
Your Current Organism:
Beutenbergia cavernae
NCBI taxonomy Id: 471853
Other names: B. cavernae DSM 12333, Beutenbergia cavernae DSM 12333, Beutenbergia cavernae str. DSM 12333, Beutenbergia cavernae strain DSM 12333
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.