STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bcav_1811Conserved hypothetical protein. (144 aa)    
Predicted Functional Partners:
Bcav_1812
Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; PFAM: AhpC/TSA family.
  
  
 0.887
Bcav_1935
Conserved hypothetical protein.
  
     0.753
rbpA
Conserved hypothetical protein; Binds to RNA polymerase (RNAP), stimulating transcription from principal, but not alternative sigma factor promoters. Belongs to the RNA polymerase-binding protein RbpA family.
  
     0.750
Bcav_0008
Hypothetical protein.
  
     0.710
Bcav_1214
Conserved hypothetical protein.
  
     0.710
Bcav_2497
GCN5-related protein N-acetyltransferase; PFAM: Acetyltransferase (GNAT) family.
  
     0.706
Bcav_1572
PFAM: Bacterial transcriptional regulator; IclR helix-turn-helix domain.
  
     0.705
Bcav_0849
Hypothetical protein.
  
     0.700
Bcav_2404
Protein of unknown function YGGT; PFAM: YGGT family.
  
     0.628
Bcav_3255
PFAM: Phosphoglycerate mutase family.
  
     0.627
Your Current Organism:
Beutenbergia cavernae
NCBI taxonomy Id: 471853
Other names: B. cavernae DSM 12333, Beutenbergia cavernae DSM 12333, Beutenbergia cavernae str. DSM 12333, Beutenbergia cavernae strain DSM 12333
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.