STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bcav_1955PFAM: Bacterial extracellular solute-binding protein. (419 aa)    
Predicted Functional Partners:
Bcav_1954
PFAM: Binding-protein-dependent transport system inner membrane component.
 
   0.958
Bcav_1953
PFAM: Binding-protein-dependent transport system inner membrane component.
 
   0.956
Bcav_1956
PFAM: Bacterial regulatory proteins, lacI family; Periplasmic binding proteins and sugar binding domain of the LacI family.
 
     0.908
Bcav_1957
Amylo-alpha-16-glucosidase; PFAM: Amylo-alpha-1,6-glucosidase.
 
     0.843
Bcav_1655
PFAM: Bacterial extracellular solute-binding protein.
  
     0.642
Bcav_2274
PFAM: Bacterial extracellular solute-binding protein.
  
     0.579
Bcav_2819
PFAM: Bacterial extracellular solute-binding protein.
  
     0.503
Bcav_1066
PFAM: Phosphotransferase enzyme family.
  
     0.480
Bcav_2273
PFAM: Binding-protein-dependent transport system inner membrane component.
 
   0.457
Bcav_0785
PFAM: ABC transporter; TOBE domain.
  
 
 0.450
Your Current Organism:
Beutenbergia cavernae
NCBI taxonomy Id: 471853
Other names: B. cavernae DSM 12333, Beutenbergia cavernae DSM 12333, Beutenbergia cavernae str. DSM 12333, Beutenbergia cavernae strain DSM 12333
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.