STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bcav_2259PFAM: Major Facilitator Superfamily. (491 aa)    
Predicted Functional Partners:
Bcav_2260
PFAM: Cellulase (glycosyl hydrolase family 5); Belongs to the glycosyl hydrolase 5 (cellulase A) family.
 
     0.805
Bcav_2258
PFAM: Major Facilitator Superfamily.
     
 0.763
Bcav_2257
PFAM: Pyridine nucleotide-disulphide oxidoreductase; Flavin containing amine oxidoreductase.
  
    0.692
Bcav_2261
GCN5-related protein N-acetyltransferase; PFAM: Acetyltransferase (GNAT) family.
       0.564
Bcav_1457
PFAM: Glycosyl hydrolases family 2, immunoglobulin-like beta-sandwich domain; Glycosyl hydrolases family 2, sugar binding domain; Glycosyl hydrolases family 2, TIM barrel domain.
 
  
 0.508
Bcav_3379
PFAM: Glycosyl hydrolases family 2, sugar binding domain; Glycosyl hydrolases family 2, TIM barrel domain; Beta galactosidase small chain; Glycosyl hydrolases family 2, immunoglobulin-like beta-sandwich domain.
 
  
 0.492
Bcav_3626
PFAM: FGGY family of carbohydrate kinases, N-terminal domain.
 
  
 0.433
Bcav_3043
PFAM: Glycosyl hydrolase family 20, catalytic domain.
 
     0.423
Bcav_2960
Galactokinase; PFAM: GHMP kinases N terminal domain; GHMP kinases C terminal; Galactokinase galactose-binding signature; TIGRFAM: galactokinase; Belongs to the GHMP kinase family. GalK subfamily.
 
  
 0.422
kduI
4-deoxy-L-threo-5-hexosulose-uronateketol-isomer ase; Catalyzes the isomerization of 5-dehydro-4-deoxy-D- glucuronate to 3-deoxy-D-glycero-2,5-hexodiulosonate. Belongs to the KduI family.
  
  
 0.412
Your Current Organism:
Beutenbergia cavernae
NCBI taxonomy Id: 471853
Other names: B. cavernae DSM 12333, Beutenbergia cavernae DSM 12333, Beutenbergia cavernae str. DSM 12333, Beutenbergia cavernae strain DSM 12333
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