STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bcav_2590PFAM: Bacterial extracellular solute-binding protein. (464 aa)    
Predicted Functional Partners:
Bcav_2591
PFAM: Binding-protein-dependent transport system inner membrane component.
 
   0.969
Bcav_2592
PFAM: Binding-protein-dependent transport system inner membrane component.
 
   0.948
Bcav_2589
PfkB domain protein; PFAM: pfkB family carbohydrate kinase.
 
    0.917
Bcav_2588
PFAM: Family 4 glycosyl hydrolase.
 
     0.866
valS
tRNA synthetase valyl/leucyl anticodon-binding; Catalyzes the attachment of valine to tRNA(Val). As ValRS can inadvertently accommodate and process structurally similar amino acids such as threonine, to avoid such errors, it has a 'posttransfer' editing activity that hydrolyzes mischarged Thr-tRNA(Val) in a tRNA- dependent manner.
       0.577
Bcav_2594
AMP-dependent synthetase and ligase; PFAM: AMP-binding enzyme.
       0.576
Bcav_2587
PFAM: Luciferase-like monooxygenase.
       0.492
Bcav_2585
Conserved hypothetical protein.
       0.477
Bcav_2586
F420-dependent oxidoreductase; PFAM: F420-0:Gamma-glutamyl ligase; TIGRFAM: F420-dependent oxidoreductase, putative.
       0.477
Bcav_3995
PFAM: Binding-protein-dependent transport system inner membrane component.
 
 
 0.472
Your Current Organism:
Beutenbergia cavernae
NCBI taxonomy Id: 471853
Other names: B. cavernae DSM 12333, Beutenbergia cavernae DSM 12333, Beutenbergia cavernae str. DSM 12333, Beutenbergia cavernae strain DSM 12333
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.