STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bcav_2653PFAM: Glycerophosphoryl diester phosphodiesterase family. (257 aa)    
Predicted Functional Partners:
Bcav_1217
PFAM: Glycerophosphoryl diester phosphodiesterase family.
  
     0.774
glpK
Glycerol kinase; Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate; Belongs to the FGGY kinase family.
  
  
 0.560
Bcav_2654
Hypothetical protein.
       0.520
Bcav_2652
PFAM: Rhodanese-like domain.
  
    0.514
Bcav_2650
PFAM: Domain of Unknown Function (DUF1206).
       0.437
Bcav_2651
PFAM: Fe-S metabolism associated domain.
       0.437
Bcav_3392
PFAM: Mandelate racemase / muconate lactonizing enzyme, N-terminal domain; Mandelate racemase / muconate lactonizing enzyme, C-terminal domain.
      
 0.421
Bcav_3925
Protein of unknown function DUF161; PFAM: Uncharacterized BCR, YitT family COG1284.
      0.402
Your Current Organism:
Beutenbergia cavernae
NCBI taxonomy Id: 471853
Other names: B. cavernae DSM 12333, Beutenbergia cavernae DSM 12333, Beutenbergia cavernae str. DSM 12333, Beutenbergia cavernae strain DSM 12333
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.