STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bcav_2682PFAM: Protein of unknown function DUF72. (277 aa)    
Predicted Functional Partners:
Bcav_2681
Protein of unknown function DUF125 transmembrane; PFAM: Integral membrane protein DUF125.
       0.685
Bcav_2683
PFAM: NmrA-like family.
  
    0.616
Bcav_2680
Hypothetical protein.
       0.555
Bcav_0653
DNA polymerase LigD, polymerase domain protein; PFAM: ATP dependent DNA ligase C terminal region; Eukaryotic and archaeal DNA primase small subunit; ATP dependent DNA ligase domain; TIGRFAM: DNA ligase D; DNA polymerase LigD, ligase domain; DNA polymerase LigD, polymerase domain; DNA ligase D, 3'-phosphoesterase domain.
 
    0.455
Bcav_2684
PFAM: NmrA-like family.
  
    0.453
Bcav_2685
PFAM: Xylose isomerase-like TIM barrel; TIGRFAM: apurinic endonuclease (APN1).
       0.401
Your Current Organism:
Beutenbergia cavernae
NCBI taxonomy Id: 471853
Other names: B. cavernae DSM 12333, Beutenbergia cavernae DSM 12333, Beutenbergia cavernae str. DSM 12333, Beutenbergia cavernae strain DSM 12333
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.