STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bcav_2793Transcriptional regulator, AraC family. (219 aa)    
Predicted Functional Partners:
Bcav_2792
PFAM: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily.
 
    0.749
Bcav_4110
PFAM: Cna protein B-type domain; TIGRFAM: LPXTG-motif cell wall anchor domain.
  
     0.694
Bcav_2794
PFAM: Protein of unknown function (DUF664).
       0.580
Bcav_0426
Response regulator receiver protein.
  
    0.557
Bcav_2078
PFAM: Phosphotransferase enzyme family.
  
     0.529
Bcav_2686
PFAM: alpha/beta hydrolase fold.
  
     0.492
Bcav_3520
Coenzyme F390 synthetase.
  
     0.488
Bcav_2687
PFAM: Bacterial regulatory proteins, tetR family.
  
     0.479
Bcav_2795
Cobalamin (vitamin B12) biosynthesis CbiX protein; PFAM: CbiX.
       0.443
Bcav_3521
Hypothetical protein.
  
     0.429
Your Current Organism:
Beutenbergia cavernae
NCBI taxonomy Id: 471853
Other names: B. cavernae DSM 12333, Beutenbergia cavernae DSM 12333, Beutenbergia cavernae str. DSM 12333, Beutenbergia cavernae strain DSM 12333
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.