STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bcav_2926Putative integral membrane protein. (394 aa)    
Predicted Functional Partners:
Bcav_2928
Conserved hypothetical protein; PFAM: Possible lysine decarboxylase; TIGRFAM: conserved hypothetical protein, DprA/Smf-related protein, family 2; conserved hypothetical protein, DprA/Smf-related protein, family 1; Belongs to the LOG family.
       0.833
Bcav_2929
PFAM: Peptidase family M20/M25/M40; TIGRFAM: succinyl-diaminopimelate desuccinylase.
       0.833
Bcav_2927
Hypothetical protein.
       0.773
Bcav_2925
Conserved hypothetical protein.
       0.667
Bcav_2930
Hypothetical protein.
       0.574
Bcav_2924
Leucyl aminopeptidase; Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N- terminal amino acids from various peptides. Belongs to the peptidase M17 family.
       0.541
Bcav_2785
Hypothetical protein.
  
     0.520
Bcav_1268
Conserved hypothetical protein.
  
     0.515
Bcav_0817
Glycoside hydrolase 15-related protein; PFAM: Glycosyl hydrolases family 15.
  
     0.480
Bcav_2251
Conserved hypothetical protein.
  
     0.462
Your Current Organism:
Beutenbergia cavernae
NCBI taxonomy Id: 471853
Other names: B. cavernae DSM 12333, Beutenbergia cavernae DSM 12333, Beutenbergia cavernae str. DSM 12333, Beutenbergia cavernae strain DSM 12333
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.