STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bcav_2963PFAM: ABC transporter. (251 aa)    
Predicted Functional Partners:
Bcav_2964
Protein of unknown function DUF214; PFAM: Predicted permease.
 
 0.997
Bcav_2962
Hypothetical protein; PFAM: Putative peptidoglycan binding domain.
 
    0.911
Bcav_2961
Hypothetical protein.
       0.773
Bcav_3175
Protein of unknown function DUF214; PFAM: Predicted permease.
  
 
 0.648
Bcav_2725
PFAM: Oligopeptide/dipeptide transporter, C-terminal region; ABC transporter; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain; Belongs to the ABC transporter superfamily.
 
    
0.601
Bcav_0784
PFAM: ABC transporter.
 
    
0.535
Bcav_2484
Protein of unknown function DUF214; PFAM: Predicted permease.
 
 
 0.525
Bcav_3627
PFAM: HNH endonuclease.
  
 
 0.518
Bcav_1557
Protein of unknown function DUF214; PFAM: Predicted permease.
  
 
 0.507
Bcav_2958
Transcriptional regulator, DeoR family; PFAM: DeoR-like helix-turn-helix domain; Bacterial regulatory proteins, deoR family.
       0.503
Your Current Organism:
Beutenbergia cavernae
NCBI taxonomy Id: 471853
Other names: B. cavernae DSM 12333, Beutenbergia cavernae DSM 12333, Beutenbergia cavernae str. DSM 12333, Beutenbergia cavernae strain DSM 12333
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.