STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bcav_3099Transcriptional regulator, SARP family; PFAM: Transcriptional regulatory protein, C terminal; NB-ARC domain; Bacterial transcriptional activator domain. (910 aa)    
Predicted Functional Partners:
Bcav_3098
Transcriptional regulator, SARP family; PFAM: Bacterial transcriptional activator domain; Transcriptional regulatory protein, C terminal.
 
   
0.788
Bcav_1165
PFAM: Cell envelope-related protein transcriptional attenuator domain; TIGRFAM: cell envelope-related protein function transcriptional attenuator common domain.
   
    0.653
Bcav_3097
Transcriptional regulator, SARP family; PFAM: Transcriptional regulatory protein, C terminal; Bacterial transcriptional activator domain; NB-ARC domain.
 
  
0.653
Bcav_1450
PFAM: Cytidine and deoxycytidylate deaminase zinc-binding region.
   
  
 0.624
Bcav_1650
PFAM: Bacterial regulatory helix-turn-helix protein, lysR family; TIGRFAM: transcriptional regulator, ArgP family.
   
    0.616
Bcav_0444
PFAM: Bacterial regulatory proteins, luxR family.
 
  
 0.614
Bcav_2081
Transcriptional regulator, HxlR family; PFAM: HxlR-like helix-turn-helix.
   
    0.611
coaA
TIGRFAM: pantothenate kinase, bacterial type.
       0.565
moaA
Molybdenum cofactor biosynthesis protein A; Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate.
   
  
 0.547
cobB
Silent information regulator protein Sir2; NAD-dependent protein deacetylase which modulates the activities of several enzymes which are inactive in their acetylated form; Belongs to the sirtuin family. Class II subfamily.
   
    0.527
Your Current Organism:
Beutenbergia cavernae
NCBI taxonomy Id: 471853
Other names: B. cavernae DSM 12333, Beutenbergia cavernae DSM 12333, Beutenbergia cavernae str. DSM 12333, Beutenbergia cavernae strain DSM 12333
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.