Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Bcav_3208Hypothetical protein. (449 aa)    
Predicted Functional Partners:
Bcav_3209
Peptidase S8 and S53 subtilisin kexin sedolisin; PFAM: Subtilase family.
  
   0.812
Bcav_3207
Hypothetical protein.
       0.682
Bcav_3206
Protein of unknown function DUF909; PFAM: Proteins of 100 residues with WXG; Belongs to the WXG100 family.
  
   0.516
Bcav_3210
Protein of unknown function DUF909; PFAM: Proteins of 100 residues with WXG.
  
   0.511
Bcav_3211
Protein of unknown function DUF909; PFAM: Proteins of 100 residues with WXG.
  
   0.497
Bcav_3204
PFAM: Protein of unknown function (DUF571); TIGRFAM: secretion protein snm4.
  
 
 0.460
Bcav_3202
Peptidase S8 and S53 subtilisin kexin sedolisin; PFAM: Subtilase family.
  
   0.448
Bcav_3205
Protein of unknown function DUF909; PFAM: Proteins of 100 residues with WXG; Belongs to the WXG100 family.
  
   0.439
Bcav_3203
PFAM: Protein of unknown function (DUF690).
       0.409
Your Current Organism:
Beutenbergia cavernae
NCBI taxonomy Id: 471853
Other names: B. cavernae DSM 12333, Beutenbergia cavernae DSM 12333, Beutenbergia cavernae str. DSM 12333, Beutenbergia cavernae strain DSM 12333
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