STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bcav_3563Peptidase S8 and S53 subtilisin kexin sedolisin; PFAM: Subtilase family. (452 aa)    
Predicted Functional Partners:
Bcav_3214
Cell divisionFtsK/SpoIIIE; PFAM: FtsK/SpoIIIE family.
 
 
 0.800
Bcav_3203
PFAM: Protein of unknown function (DUF690).
 
 
 0.782
Bcav_3204
PFAM: Protein of unknown function (DUF571); TIGRFAM: secretion protein snm4.
 
  
 0.739
Bcav_3206
Protein of unknown function DUF909; PFAM: Proteins of 100 residues with WXG; Belongs to the WXG100 family.
 
   
 0.686
Bcav_3211
Protein of unknown function DUF909; PFAM: Proteins of 100 residues with WXG.
 
   
 0.686
Bcav_3562
PFAM: Pyridine nucleotide-disulphide oxidoreductase; FAD dependent oxidoreductase; Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain.
  
    0.577
Bcav_3564
PFAM: 2Fe-2S iron-sulfur cluster binding domain; TIGRFAM: succinate dehydrogenase and fumarate reductase iron-sulfur protein.
       0.509
Bcav_3565
PFAM: Fumarate reductase/succinate dehydrogenase flavoprotein C-terminal domain; Pyridine nucleotide-disulphide oxidoreductase.
       0.509
Bcav_3566
Integral membrane protein.
       0.506
Bcav_3567
Conserved hypothetical protein.
       0.506
Your Current Organism:
Beutenbergia cavernae
NCBI taxonomy Id: 471853
Other names: B. cavernae DSM 12333, Beutenbergia cavernae DSM 12333, Beutenbergia cavernae str. DSM 12333, Beutenbergia cavernae strain DSM 12333
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.