STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bcav_3625Rhamnulose-1-phosphate aldolase/alcohol dehydrogenase; PFAM: Class II Aldolase and Adducin N-terminal domain; short chain dehydrogenase; TIGRFAM: rhamnulose-1-phosphate aldolase/alcohol dehydrogenase. (687 aa)    
Predicted Functional Partners:
Bcav_3626
PFAM: FGGY family of carbohydrate kinases, N-terminal domain.
 
 0.977
Bcav_3624
PFAM: Xylose isomerase-like TIM barrel; TIGRFAM: L-rhamnose isomerase, Streptomyces subtype.
 
     0.922
Bcav_3612
PFAM: Protein of unknown function (DUF718).
 
  
 0.876
Bcav_3608
PFAM: Bacterial regulatory proteins, lacI family; Periplasmic binding proteins and sugar binding domain of the LacI family.
 
   0.602
Bcav_3620
PFAM: Alpha-L-rhamnosidase N-terminal domain; Bacterial alpha-L-rhamnosidase.
 
 
 0.592
Bcav_3616
L-arabinose isomerase; Catalyzes the conversion of L-arabinose to L-ribulose.
 
     0.515
Bcav_3293
L-lactate dehydrogenase (cytochrome); PFAM: FMN-dependent dehydrogenase.
 
 
 0.471
Bcav_0786
PFAM: Aldehyde dehydrogenase family.
 
 
 0.457
Bcav_1807
(Acyl-carrier-protein) S-malonyltransferase.
  
 
 0.437
Bcav_1511
Transcriptional regulator, DeoR family; PFAM: DeoR-like helix-turn-helix domain; Bacterial regulatory proteins, deoR family.
  
  
 0.427
Your Current Organism:
Beutenbergia cavernae
NCBI taxonomy Id: 471853
Other names: B. cavernae DSM 12333, Beutenbergia cavernae DSM 12333, Beutenbergia cavernae str. DSM 12333, Beutenbergia cavernae strain DSM 12333
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.