STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bcav_3714PFAM: Binding-protein-dependent transport system inner membrane component. (294 aa)    
Predicted Functional Partners:
Bcav_3713
PFAM: Binding-protein-dependent transport system inner membrane component.
   0.960
Bcav_0571
PFAM: Binding-protein-dependent transport system inner membrane component.
 
 0.881
Bcav_0307
PFAM: Binding-protein-dependent transport system inner membrane component.
 
 0.865
Bcav_0785
PFAM: ABC transporter; TOBE domain.
 
 
 0.843
Bcav_1098
PFAM: ABC transporter; Belongs to the ABC transporter superfamily.
 
 
 0.843
Bcav_1096
PFAM: Binding-protein-dependent transport system inner membrane component.
 
 0.841
Bcav_0435
PFAM: Binding-protein-dependent transport system inner membrane component.
 
 0.831
Bcav_2845
PFAM: ABC transporter; TOBE domain.
 
 
 0.830
Bcav_1681
PFAM: Binding-protein-dependent transport system inner membrane component.
   0.827
Bcav_3774
PFAM: Binding-protein-dependent transport system inner membrane component.
   0.827
Your Current Organism:
Beutenbergia cavernae
NCBI taxonomy Id: 471853
Other names: B. cavernae DSM 12333, Beutenbergia cavernae DSM 12333, Beutenbergia cavernae str. DSM 12333, Beutenbergia cavernae strain DSM 12333
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.