STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bcav_3725PFAM: Bacterial regulatory protein, arsR family. (196 aa)    
Predicted Functional Partners:
Bcav_3724
PFAM: Dienelactone hydrolase family.
 
     0.741
Bcav_3760
DoxX family protein; PFAM: DoxX.
  
     0.616
Bcav_1967
Conserved hypothetical protein.
  
     0.605
Bcav_0473
PFAM: Glycosyl hydrolases family 43.
  
     0.595
Bcav_0174
PFAM: Polysaccharide lyase family 8, C-terminal beta-sandwich domain; Polysaccharide lyase family 8, N terminal alpha-helical domain; Polysaccharide lyase family 8, super-sandwich domain.
  
     0.530
Bcav_1104
PFAM: Phosphotransferase enzyme family.
  
     0.509
Bcav_0200
GCN5-related protein N-acetyltransferase; PFAM: Acetyltransferase (GNAT) family.
  
     0.492
Bcav_3334
PFAM: Heparinase II/III-like protein.
  
     0.478
Bcav_3723
Methyltransferase type 12; PFAM: Methyltransferase domain.
       0.462
Bcav_2660
Aminoglycoside/hydroxyurea antibiotic resistance kinase.
  
     0.443
Your Current Organism:
Beutenbergia cavernae
NCBI taxonomy Id: 471853
Other names: B. cavernae DSM 12333, Beutenbergia cavernae DSM 12333, Beutenbergia cavernae str. DSM 12333, Beutenbergia cavernae strain DSM 12333
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.