Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 annotation | node2 annotation | score |
Bcav_0739 | Bcav_3744 | PFAM: Major Facilitator Superfamily. | PFAM: Major Facilitator Superfamily. | 0.642 |
Bcav_3741 | Bcav_3742 | PFAM: Pentapeptide repeats (8 copies). | PFAM: Beta-lactamase; Tetratricopeptide repeat. | 0.631 |
Bcav_3741 | Bcav_3743 | PFAM: Pentapeptide repeats (8 copies). | Transcriptional regulator, HxlR family; PFAM: HxlR-like helix-turn-helix. | 0.636 |
Bcav_3741 | Bcav_3744 | PFAM: Pentapeptide repeats (8 copies). | PFAM: Major Facilitator Superfamily. | 0.463 |
Bcav_3741 | Bcav_3745 | PFAM: Pentapeptide repeats (8 copies). | Conserved hypothetical protein. | 0.435 |
Bcav_3741 | Bcav_3746 | PFAM: Pentapeptide repeats (8 copies). | Kinase; PFAM: Aminoglycoside/hydroxyurea antibiotic resistance kinase. | 0.435 |
Bcav_3742 | Bcav_3741 | PFAM: Beta-lactamase; Tetratricopeptide repeat. | PFAM: Pentapeptide repeats (8 copies). | 0.631 |
Bcav_3742 | Bcav_3743 | PFAM: Beta-lactamase; Tetratricopeptide repeat. | Transcriptional regulator, HxlR family; PFAM: HxlR-like helix-turn-helix. | 0.773 |
Bcav_3742 | Bcav_3744 | PFAM: Beta-lactamase; Tetratricopeptide repeat. | PFAM: Major Facilitator Superfamily. | 0.563 |
Bcav_3742 | Bcav_3745 | PFAM: Beta-lactamase; Tetratricopeptide repeat. | Conserved hypothetical protein. | 0.521 |
Bcav_3742 | Bcav_3746 | PFAM: Beta-lactamase; Tetratricopeptide repeat. | Kinase; PFAM: Aminoglycoside/hydroxyurea antibiotic resistance kinase. | 0.521 |
Bcav_3743 | Bcav_3741 | Transcriptional regulator, HxlR family; PFAM: HxlR-like helix-turn-helix. | PFAM: Pentapeptide repeats (8 copies). | 0.636 |
Bcav_3743 | Bcav_3742 | Transcriptional regulator, HxlR family; PFAM: HxlR-like helix-turn-helix. | PFAM: Beta-lactamase; Tetratricopeptide repeat. | 0.773 |
Bcav_3743 | Bcav_3744 | Transcriptional regulator, HxlR family; PFAM: HxlR-like helix-turn-helix. | PFAM: Major Facilitator Superfamily. | 0.565 |
Bcav_3743 | Bcav_3745 | Transcriptional regulator, HxlR family; PFAM: HxlR-like helix-turn-helix. | Conserved hypothetical protein. | 0.521 |
Bcav_3743 | Bcav_3746 | Transcriptional regulator, HxlR family; PFAM: HxlR-like helix-turn-helix. | Kinase; PFAM: Aminoglycoside/hydroxyurea antibiotic resistance kinase. | 0.521 |
Bcav_3744 | Bcav_0739 | PFAM: Major Facilitator Superfamily. | PFAM: Major Facilitator Superfamily. | 0.642 |
Bcav_3744 | Bcav_3741 | PFAM: Major Facilitator Superfamily. | PFAM: Pentapeptide repeats (8 copies). | 0.463 |
Bcav_3744 | Bcav_3742 | PFAM: Major Facilitator Superfamily. | PFAM: Beta-lactamase; Tetratricopeptide repeat. | 0.563 |
Bcav_3744 | Bcav_3743 | PFAM: Major Facilitator Superfamily. | Transcriptional regulator, HxlR family; PFAM: HxlR-like helix-turn-helix. | 0.565 |
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