STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bcav_3872PFAM: Heme oxygenase. (225 aa)    
Predicted Functional Partners:
hemH
Ferrochelatase; Catalyzes the ferrous insertion into protoporphyrin IX. Belongs to the ferrochelatase family.
    
 0.921
ctaB
Protoheme IX farnesyltransferase; Converts heme B (protoheme IX) to heme O by substitution of the vinyl group on carbon 2 of heme B porphyrin ring with a hydroxyethyl farnesyl side group.
     
 0.901
Bcav_3879
PFAM: Periplasmic binding protein.
 
  
 0.739
Bcav_0882
PFAM: Iron dependent repressor, N-terminal DNA binding domain; Iron dependent repressor, metal binding and dimerisation domain; FeoA domain.
      
 0.662
Bcav_3873
PFAM: Bacterial protein of unknown function (DUF916).
       0.608
Bcav_3874
Conserved hypothetical protein.
 
     0.584
Bcav_3871
Conserved hypothetical protein.
       0.499
hmuV
ABC transporter related; Part of the ABC transporter complex HmuTUV involved in hemin import. Responsible for energy coupling to the transport system.
      0.479
Bcav_3253
PFAM: Cytochrome C biogenesis protein transmembrane region.
      
 0.455
Bcav_1440
Exo-alpha-sialidase.
  
     0.445
Your Current Organism:
Beutenbergia cavernae
NCBI taxonomy Id: 471853
Other names: B. cavernae DSM 12333, Beutenbergia cavernae DSM 12333, Beutenbergia cavernae str. DSM 12333, Beutenbergia cavernae strain DSM 12333
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.