STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bcav_3927Conserved hypothetical protein. (232 aa)    
Predicted Functional Partners:
Bcav_1909
Conserved hypothetical protein.
  
    0.668
Bcav_2081
Transcriptional regulator, HxlR family; PFAM: HxlR-like helix-turn-helix.
   
    0.659
cobB
Silent information regulator protein Sir2; NAD-dependent protein deacetylase which modulates the activities of several enzymes which are inactive in their acetylated form; Belongs to the sirtuin family. Class II subfamily.
  
    0.619
Bcav_1650
PFAM: Bacterial regulatory helix-turn-helix protein, lysR family; TIGRFAM: transcriptional regulator, ArgP family.
  
 
 0.575
Bcav_3889
Hypothetical protein.
  
     0.544
Bcav_3926
PFAM: YbaK / prolyl-tRNA synthetases associated domain; TIGRFAM: phage conserved hypothetical protein.
       0.534
Bcav_3925
Protein of unknown function DUF161; PFAM: Uncharacterized BCR, YitT family COG1284.
       0.526
Bcav_0419
Conserved hypothetical protein.
  
     0.508
Bcav_1165
PFAM: Cell envelope-related protein transcriptional attenuator domain; TIGRFAM: cell envelope-related protein function transcriptional attenuator common domain.
   
    0.508
Bcav_2313
PFAM: SPFH domain / Band 7 family.
   
    0.499
Your Current Organism:
Beutenbergia cavernae
NCBI taxonomy Id: 471853
Other names: B. cavernae DSM 12333, Beutenbergia cavernae DSM 12333, Beutenbergia cavernae str. DSM 12333, Beutenbergia cavernae strain DSM 12333
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.