STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bcav_3942PFAM: Binding-protein-dependent transport system inner membrane component. (322 aa)    
Predicted Functional Partners:
Bcav_3943
PFAM: Binding-protein-dependent transport system inner membrane component.
  
0.875
Bcav_1542
PFAM: Binding-protein-dependent transport system inner membrane component.
 
   0.820
Bcav_3677
PFAM: Binding-protein-dependent transport system inner membrane component.
 
   0.816
Bcav_0436
PFAM: Binding-protein-dependent transport system inner membrane component.
 
   0.810
Bcav_0129
PFAM: Binding-protein-dependent transport system inner membrane component.
 
   0.808
Bcav_3984
PFAM: Binding-protein-dependent transport system inner membrane component.
 
   0.806
Bcav_1298
PFAM: Binding-protein-dependent transport system inner membrane component.
 
   0.802
Bcav_1710
PFAM: Binding-protein-dependent transport system inner membrane component.
  
   0.791
Bcav_0278
PFAM: Binding-protein-dependent transport system inner membrane component.
  
   0.785
Bcav_4196
PFAM: Binding-protein-dependent transport system inner membrane component.
 
   0.781
Your Current Organism:
Beutenbergia cavernae
NCBI taxonomy Id: 471853
Other names: B. cavernae DSM 12333, Beutenbergia cavernae DSM 12333, Beutenbergia cavernae str. DSM 12333, Beutenbergia cavernae strain DSM 12333
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.