STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bcav_3996PFAM: Bacterial extracellular solute-binding protein. (472 aa)    
Predicted Functional Partners:
Bcav_3995
PFAM: Binding-protein-dependent transport system inner membrane component.
 
 0.988
Bcav_3994
PFAM: Binding-protein-dependent transport system inner membrane component.
 
  0.982
Bcav_3997
Conserved hypothetical protein.
 
     0.919
Bcav_3998
PFAM: SIS domain; Helix-turn-helix domain, rpiR family.
 
     0.859
Bcav_3999
PFAM: BadF/BadG/BcrA/BcrD ATPase family.
 
    0.784
Bcav_1342
TPR repeat-containing protein.
 
     0.701
Bcav_3388
PFAM: Bacterial extracellular solute-binding protein; TIGRFAM: Tat (twin-arginine translocation) pathway signal sequence.
  
     0.529
Bcav_1579
Putative lipoprotein precursor LplA; TIGRFAM: Tat (twin-arginine translocation) pathway signal sequence.
  
     0.496
Bcav_3539
Sugar isomerase (SIS); PFAM: SIS domain.
 
    0.495
Bcav_0785
PFAM: ABC transporter; TOBE domain.
  
 
 0.410
Your Current Organism:
Beutenbergia cavernae
NCBI taxonomy Id: 471853
Other names: B. cavernae DSM 12333, Beutenbergia cavernae DSM 12333, Beutenbergia cavernae str. DSM 12333, Beutenbergia cavernae strain DSM 12333
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.