STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bcav_4133ATP-dependent transcriptional regulator, MalT-like, LuxR family; PFAM: Bacterial regulatory proteins, luxR family. (749 aa)    
Predicted Functional Partners:
Bcav_3889
Hypothetical protein.
  
     0.689
Bcav_0767
TIGRFAM: conserved repeat domain; LPXTG-motif cell wall anchor domain.
  
     0.681
Bcav_0216
Conserved hypothetical protein.
 
     0.604
Bcav_0758
Conserved hypothetical protein.
 
     0.565
Bcav_4134
PFAM: Sulfatase.
       0.527
Bcav_4135
Hypothetical protein.
       0.506
Bcav_0085
PFAM: alpha/beta hydrolase fold.
  
     0.502
Bcav_0753
Conserved hypothetical protein.
 
     0.494
Bcav_4028
Abortive infection protein; PFAM: CAAX amino terminal protease family.
  
     0.477
Bcav_3821
PFAM: Sodium/hydrogen exchanger family.
  
     0.442
Your Current Organism:
Beutenbergia cavernae
NCBI taxonomy Id: 471853
Other names: B. cavernae DSM 12333, Beutenbergia cavernae DSM 12333, Beutenbergia cavernae str. DSM 12333, Beutenbergia cavernae strain DSM 12333
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.