STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bcav_4163Pyridoxamine 5'-phosphate oxidase-related protein FMN-binding; PFAM: Pyridoxamine 5'-phosphate oxidase. (170 aa)    
Predicted Functional Partners:
Bcav_4164
PFAM: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily.
       0.625
Bcav_4165
PFAM: Bacterial regulatory protein, arsR family.
       0.609
Bcav_4166
PFAM: Activator of Hsp90 ATPase homolog 1-like protein.
       0.609
Bcav_4167
Hypothetical protein.
       0.561
Bcav_4093
Hypothetical protein.
  
     0.504
Bcav_1138
PFAM: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily.
  
     0.476
Bcav_2246
PFAM: Protein of unknown function DUF75.
  
    0.472
Bcav_3549
PFAM: Transcriptional regulator PadR-like family.
  
     0.466
Bcav_4168
TIGRFAM: conserved hypothetical protein.
 
     0.462
Bcav_3091
Methyltransferase type 11; PFAM: Methyltransferase domain.
  
     0.460
Your Current Organism:
Beutenbergia cavernae
NCBI taxonomy Id: 471853
Other names: B. cavernae DSM 12333, Beutenbergia cavernae DSM 12333, Beutenbergia cavernae str. DSM 12333, Beutenbergia cavernae strain DSM 12333
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.