STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bcav_4188PFAM: Uncharacterized protein conserved in bacteria (DUF2090). (290 aa)    
Predicted Functional Partners:
Bcav_4189
PfkB domain protein; PFAM: pfkB family carbohydrate kinase.
    0.978
Bcav_4186
PFAM: Xylose isomerase-like TIM barrel.
 
    0.926
Bcav_0725
PfkB domain protein; PFAM: pfkB family carbohydrate kinase.
    0.923
Bcav_4185
PFAM: Oxidoreductase family, C-terminal alpha/beta domain; Oxidoreductase family, NAD-binding Rossmann fold.
 
    0.813
Bcav_4184
Short-chain dehydrogenase/reductase SDR; PFAM: short chain dehydrogenase.
 
     0.805
Bcav_4191
PFAM: Oxidoreductase family, C-terminal alpha/beta domain; Oxidoreductase family, NAD-binding Rossmann fold.
 
    0.787
Bcav_4187
PFAM: Zinc-binding dehydrogenase; Alcohol dehydrogenase GroES-like domain; TIGRFAM: 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
       0.773
Bcav_4199
PFAM: Glycosyl hydrolases family 43.
  
     0.746
Bcav_4198
PFAM: Bacterial extracellular solute-binding protein.
  
     0.725
Bcav_0727
PFAM: Myo-inositol catabolism protein IolB.
 
  
 0.708
Your Current Organism:
Beutenbergia cavernae
NCBI taxonomy Id: 471853
Other names: B. cavernae DSM 12333, Beutenbergia cavernae DSM 12333, Beutenbergia cavernae str. DSM 12333, Beutenbergia cavernae strain DSM 12333
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.