STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bcav_4195Hypothetical protein. (336 aa)    
Predicted Functional Partners:
Bcav_4198
PFAM: Bacterial extracellular solute-binding protein.
 
     0.922
Bcav_4199
PFAM: Glycosyl hydrolases family 43.
 
     0.875
Bcav_4194
Conserved hypothetical protein; TIGRFAM: glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type.
 
     0.807
Bcav_4197
PFAM: Binding-protein-dependent transport system inner membrane component.
 
    0.792
Bcav_3936
Hypothetical protein.
 
     0.773
Bcav_2960
Galactokinase; PFAM: GHMP kinases N terminal domain; GHMP kinases C terminal; Galactokinase galactose-binding signature; TIGRFAM: galactokinase; Belongs to the GHMP kinase family. GalK subfamily.
  
 0.772
Bcav_4196
PFAM: Binding-protein-dependent transport system inner membrane component.
 
     0.765
Bcav_3675
PFAM: Bacterial extracellular solute-binding protein.
  
     0.750
Bcav_3444
Hypothetical protein; TIGRFAM: Tat (twin-arginine translocation) pathway signal sequence.
 
     0.748
Bcav_1711
PFAM: Bacterial extracellular solute-binding protein.
  
     0.733
Your Current Organism:
Beutenbergia cavernae
NCBI taxonomy Id: 471853
Other names: B. cavernae DSM 12333, Beutenbergia cavernae DSM 12333, Beutenbergia cavernae str. DSM 12333, Beutenbergia cavernae strain DSM 12333
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.