STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bcav_4208PFAM: NUDIX domain; Belongs to the Nudix hydrolase family. (174 aa)    
Predicted Functional Partners:
Bcav_4209
Conserved hypothetical protein.
       0.748
Bcav_4210
PFAM: MviN-like protein; TIGRFAM: integral membrane protein MviN.
       0.748
Bcav_4207
Polynucleotide adenylyltransferase/metal dependent phosphohydrolase; PFAM: Poly A polymerase head domain; HD domain; TIGRFAM: uncharacterized domain HDIG; tRNA adenylyltransferase; Belongs to the tRNA nucleotidyltransferase/poly(A) polymerase family.
       0.673
Bcav_3427
NUDIX hydrolase; PFAM: Phosphoglycerate mutase family; NUDIX domain; Belongs to the Nudix hydrolase family.
  
     0.580
Bcav_1269
GDSL family lipase.
 
     0.537
Bcav_0533
Conserved hypothetical protein.
  
     0.511
crgA
Protein of unknown function UPF0233; Involved in cell division; Belongs to the CrgA family.
  
     0.482
ileS
isoleucyl-tRNA synthetase; Catalyzes the attachment of isoleucine to tRNA(Ile). As IleRS can inadvertently accommodate and process structurally similar amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile). Belongs to the class-I aminoacyl-tRNA synthetase family. IleS type 2 subfamily.
  
    0.480
Bcav_1214
Conserved hypothetical protein.
  
     0.429
Bcav_1450
PFAM: Cytidine and deoxycytidylate deaminase zinc-binding region.
     
 0.423
Your Current Organism:
Beutenbergia cavernae
NCBI taxonomy Id: 471853
Other names: B. cavernae DSM 12333, Beutenbergia cavernae DSM 12333, Beutenbergia cavernae str. DSM 12333, Beutenbergia cavernae strain DSM 12333
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.