STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rnyRNA binding metal dependent phosphohydrolase; Endoribonuclease that initiates mRNA decay. Belongs to the RNase Y family. (523 aa)    
Predicted Functional Partners:
Dfer_3600
PFAM: PSP1 domain protein; KEGG: chu:CHU_0292 hypothetical protein.
 
  
 0.781
Dfer_0006
KEGG: chu:CHU_3739 magnesium chelatase, subunit ChlI.
       0.745
pheT
KEGG: chu:CHU_1130 phenylalanyl-tRNA synthetase subunit beta; TIGRFAM: phenylalanyl-tRNA synthetase, beta subunit.
 
  
 0.603
Dfer_0009
Hypothetical protein; KEGG: GH11364 gene product from transcript GH11364- RA.
       0.553
Dfer_0008
Hypothetical protein.
       0.539
Dfer_4394
PFAM: DAHP synthetase I/KDSA; Chorismate mutase; KEGG: chu:CHU_0719 3-deoxy-7-phosphoheptulonate synthase.
 
     0.520
Dfer_4381
PFAM: phosphoesterase RecJ domain protein; phosphoesterase DHHA1; KEGG: chu:CHU_3649 hypothetical protein.
 
   
 0.474
Dfer_2377
PFAM: OmpA/MotB domain protein; KEGG: gfo:GFO_2317 OmpA/MotB family outer membrane protein.
    
   0.468
rpsO
Ribosomal protein S15; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome.
 
  
 0.413
Dfer_2490
Histidine kinase; PFAM: ATP-binding region ATPase domain protein; SMART: ATP-binding region ATPase domain protein; KEGG: chu:CHU_0334 sensor histidine kinase.
  
     0.409
Your Current Organism:
Dyadobacter fermentans
NCBI taxonomy Id: 471854
Other names: D. fermentans DSM 18053, Dyadobacter fermentans DSM 18053, Dyadobacter fermentans str. DSM 18053, Dyadobacter fermentans strain DSM 18053
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.