STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dfer_0046TIGRFAM: exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; PFAM: sugar transferase; KEGG: fjo:Fjoh_4994 undecaprenyl-phosphate galactose phosphotransferase. (456 aa)    
Predicted Functional Partners:
Dfer_3362
Capsular exopolysaccharide family; KEGG: bfr:BF2769 tyrosine-protein kinase; TIGRFAM: capsular exopolysaccharide family; PFAM: lipopolysaccharide biosynthesis protein.
 
  
 0.981
Dfer_0065
Capsular exopolysaccharide family; KEGG: fps:FP1275 tyrosine-protein kinase involved in exopolysaccharide biosynthesis; TIGRFAM: capsular exopolysaccharide family; PFAM: lipopolysaccharide biosynthesis protein.
 
  
 0.980
Dfer_0165
PFAM: lipopolysaccharide biosynthesis protein; KEGG: cts:Ctha_0389 uncharacterized protein involved in exopolysaccharide biosynthesis-like protein.
  
  
 0.953
gmd
GDP-mannose 4,6-dehydratase; Catalyzes the conversion of GDP-D-mannose to GDP-4-dehydro-6- deoxy-D-mannose.
  
  
 0.932
Dfer_0168
KEGG: cts:Ctha_0387 hypothetical protein.
  
  
 0.904
Dfer_3883
PFAM: Nucleotidyl transferase; KEGG: chu:CHU_0300 mannose-1-phosphate guanylyltransferase (GDP).
 
  
 0.898
Dfer_0186
PFAM: glycosyl transferase family 2; KEGG: cts:Ctha_0376 glycosyl transferase family 2.
   
 0.891
Dfer_0066
PFAM: polysaccharide export protein; KEGG: fps:FP1276 polysaccharide exporter precursor.
 
  
 0.880
Dfer_2769
PFAM: polysaccharide export protein; KEGG: bfs:BF1707 putative capsule polysaccharide export protein.
  
  
 0.864
Dfer_4595
Hypothetical protein; KEGG: bfr:BF3651 putative O-antigen polymerase.
  
  
 0.864
Your Current Organism:
Dyadobacter fermentans
NCBI taxonomy Id: 471854
Other names: D. fermentans DSM 18053, Dyadobacter fermentans DSM 18053, Dyadobacter fermentans str. DSM 18053, Dyadobacter fermentans strain DSM 18053
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.