STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dfer_0069PFAM: protein of unknown function DUF1080; KEGG: rba:RB6615 secreted glycosyl hydrolase. (209 aa)    
Predicted Functional Partners:
Dfer_3499
PFAM: protein of unknown function DUF1080; KEGG: rba:RB10138 putative membrane lipoprotein.
  
     0.761
Dfer_0295
PFAM: protein of unknown function DUF1080; KEGG: rba:RB12084 hypothetical protein.
  
     0.742
Dfer_0070
KEGG: rci:RCIX849 hypothetical protein.
       0.741
Dfer_3173
KEGG: rba:RB7476 signal peptide.
  
     0.686
Dfer_3175
PFAM: protein of unknown function DUF1080; KEGG: sus:Acid_0812 hypothetical protein.
  
     0.648
Dfer_3055
TIGRFAM: membrane-bound dehydrogenase domain protein; KEGG: rba:RB4621 signal peptide.
  
     0.616
Dfer_0656
TIGRFAM: membrane-bound dehydrogenase domain protein; PFAM: blue (type 1) copper domain protein; KEGG: rba:RB2605 azurin precursor.
  
     0.613
Dfer_3060
TIGRFAM: membrane-bound dehydrogenase domain protein; heme-binding protein; KEGG: rba:RB4621 signal peptide.
  
     0.613
Dfer_3162
PFAM: oxidoreductase domain protein; KEGG: sus:Acid_5325 oxidoreductase domain- containing protein.
 
     0.606
Dfer_1232
PFAM: Xylose isomerase domain protein TIM barrel; KEGG: pdi:BDI_3797 hypothetical protein.
 
     0.555
Your Current Organism:
Dyadobacter fermentans
NCBI taxonomy Id: 471854
Other names: D. fermentans DSM 18053, Dyadobacter fermentans DSM 18053, Dyadobacter fermentans str. DSM 18053, Dyadobacter fermentans strain DSM 18053
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.