STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dfer_0107PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; KEGG: rca:Rcas_3863 alpha amylase catalytic region. (543 aa)    
Predicted Functional Partners:
Dfer_0152
KEGG: cpb:Cphamn1_0240 trehalose synthase; TIGRFAM: trehalose synthase; trehalose synthase- fused possible maltokinase; PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain.
 
0.965
Dfer_5180
PFAM: glycoside hydrolase clan GH-D; KEGG: lac:LBA1438 alpha-galactosidase.
 
 
 0.928
Dfer_4868
Beta-galactosidase; KEGG: fjo:Fjoh_4857 beta-glucosidase; TIGRFAM: beta-galactosidase; PFAM: glycoside hydrolase family 1.
 
 
 0.924
Dfer_2756
Kojibiose phosphorylase; PFAM: glycoside hydrolase family 65 central catalytic; glycoside hydrolase family 65 domain protein; KEGG: cac:CAC2685 trehalose/maltose hydrolase (phosphorylase).
 
 
 0.923
Dfer_2425
PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; KEGG: dth:DICTH_1568 alpha-amylase 3.
  
  
 
0.922
Dfer_0624
PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; KEGG: rec:RHECIAT_CH0002370 putative maltose alpha- D-glucosyltransferase protein.
  
  
 
0.920
Dfer_2083
PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; KEGG: bra:BRADO0512 maltose alpha-D- glucosyltransferase.
  
  
 
0.920
Dfer_1312
KEGG: ote:Oter_0169 putative alpha-glucosidase.
   
 0.910
Dfer_1855
PFAM: Carbohydrate binding family 6; KEGG: bth:BT_3133 alpha-galactosidase.
  
 
 0.910
Dfer_5716
PFAM: ROK family protein; KEGG: cts:Ctha_1950 ROK family protein.
    
 0.904
Your Current Organism:
Dyadobacter fermentans
NCBI taxonomy Id: 471854
Other names: D. fermentans DSM 18053, Dyadobacter fermentans DSM 18053, Dyadobacter fermentans str. DSM 18053, Dyadobacter fermentans strain DSM 18053
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.