STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dfer_0138KEGG: scl:sce1553 O-methyltransferase family protein. (192 aa)    
Predicted Functional Partners:
Dfer_4737
PFAM: RagB/SusD domain protein; KEGG: bvu:BVU_1153 hypothetical protein.
  
     0.585
Dfer_0301
PFAM: RagB/SusD domain protein; KEGG: bvu:BVU_1153 hypothetical protein.
  
     0.578
Dfer_0137
KEGG: sus:Acid_2174 hypothetical protein.
       0.548
Dfer_0300
PFAM: TonB-dependent receptor plug; TonB-dependent receptor; KEGG: bvu:BVU_1152 hypothetical protein.
  
     0.469
Dfer_0139
TIGRFAM: formaldehyde dehydrogenase, glutathione- independent; PFAM: Alcohol dehydrogenase GroES domain protein; Alcohol dehydrogenase zinc-binding domain protein; KEGG: cps:CPS_4039 putative glutathione-independent formaldehyde dehydrogenase.
  
    0.465
Dfer_4736
PFAM: TonB-dependent receptor plug; TonB-dependent receptor; KEGG: bvu:BVU_1152 hypothetical protein.
  
     0.460
Dfer_1110
PFAM: response regulator receiver; adenylyl cyclase class-3/4/guanylyl cyclase; SMART: response regulator receiver; adenylyl cyclase class-3/4/guanylyl cyclase; KEGG: mxa:MXAN_4049 serine/threonine protein kinase/response regulator/adenylate cyclase.
  
   
 0.453
Your Current Organism:
Dyadobacter fermentans
NCBI taxonomy Id: 471854
Other names: D. fermentans DSM 18053, Dyadobacter fermentans DSM 18053, Dyadobacter fermentans str. DSM 18053, Dyadobacter fermentans strain DSM 18053
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.