STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dfer_0200KEGG: aas:Aasi_0098 hypothetical protein. (341 aa)    
Predicted Functional Partners:
Dfer_3878
KEGG: aas:Aasi_0200 hypothetical protein.
  
     0.726
secE
Preprotein translocase, SecE subunit; Essential subunit of the Sec protein translocation channel SecYEG. Clamps together the 2 halves of SecY. May contact the channel plug during translocation.
  
     0.712
Dfer_4872
DNA uptake protein and related DNA-binding protein-like protein; KEGG: bth:BT_3641 hypothetical protein.
  
     0.708
Dfer_2409
KEGG: chu:CHU_2139 CHU large protein, SAP or adhesin AidA-related.
  
     0.655
Dfer_2916
KEGG: chu:CHU_0172 gliding motility-related protein.
  
     0.648
Dfer_4875
KEGG: chu:CHU_3630 hypothetical protein.
  
     0.623
Dfer_3308
KEGG: chu:CHU_2139 CHU large protein, SAP or adhesin AidA-related.
  
     0.614
Dfer_4867
KEGG: chu:CHU_2139 CHU large protein, SAP or adhesin AidA-related.
  
     0.604
Dfer_4963
KEGG: chu:CHU_2520 hypothetical protein.
  
     0.594
Dfer_4535
KEGG: chu:CHU_2139 CHU large protein, SAP or adhesin AidA-related.
  
     0.586
Your Current Organism:
Dyadobacter fermentans
NCBI taxonomy Id: 471854
Other names: D. fermentans DSM 18053, Dyadobacter fermentans DSM 18053, Dyadobacter fermentans str. DSM 18053, Dyadobacter fermentans strain DSM 18053
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.