STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dfer_0253PFAM: glycosyl transferase group 1; KEGG: min:Minf_0549 glycosyltransferase. (384 aa)    
Predicted Functional Partners:
Dfer_0254
PFAM: glycosyl transferase group 1; KEGG: chu:CHU_0869 A-glycosyltransferase.
 
     0.931
Dfer_0252
PFAM: glycosyl transferase family 2; KEGG: bvu:BVU_2654 glycosyl transferase family protein.
    0.884
Dfer_0255
KEGG: mar:MAE_02120 hypothetical protein.
 
     0.791
Dfer_2774
KEGG: sus:Acid_4389 hypothetical protein.
  
     0.743
Dfer_4681
KEGG: stt:t2304 hypothetical protein.
  
     0.704
Dfer_5106
Membrane protein-like protein; KEGG: dth:DICTH_0563 hypothetical protein.
  
     0.700
Dfer_0251
KEGG: pdi:BDI_2205 putative colanic acid biosynthesis acetyltransferase WcaF.
 
    0.696
Dfer_0250
PFAM: glycosyl transferase family 2; KEGG: rba:RB2469 glycosyltransferase-like protein.
 
    0.673
Dfer_5134
PFAM: glycosyl transferase group 1; KEGG: bxe:Bxe_A3861 putative glycosyltransferase.
 
     0.664
Dfer_3958
PFAM: Fibronectin type III domain protein; KEGG: cts:Ctha_1991 fibronectin type III domain protein.
  
     0.654
Your Current Organism:
Dyadobacter fermentans
NCBI taxonomy Id: 471854
Other names: D. fermentans DSM 18053, Dyadobacter fermentans DSM 18053, Dyadobacter fermentans str. DSM 18053, Dyadobacter fermentans strain DSM 18053
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.