STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dfer_0259KEGG: oca:OCAR_4053 hypothetical protein. (58 aa)    
Predicted Functional Partners:
Dfer_1958
PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: pcu:pc0934 hypothetical protein.
  
     0.638
Dfer_3187
KEGG: nmu:Nmul_A1577 hypothetical protein.
  
     0.576
Dfer_0359
KEGG: bxe:Bxe_B1169 hypothetical protein.
  
     0.562
Dfer_1122
KEGG: psp:PSPPH_1192 hypothetical protein.
  
     0.559
Dfer_0258
PFAM: amidohydrolase; Amidohydrolase 3; KEGG: mxa:MXAN_2373 M38 (beta-aspartyl dipeptidase) family protein.
       0.532
Dfer_5185
PFAM: band 7 protein; KEGG: sfx:S1990 putative serine protease.
  
     0.525
Dfer_0365
TIGRFAM: DNA ligase D; DNA polymerase LigD, ligase domain protein; DNA ligase D, 3'-phosphoesterase domain protein; DNA polymerase LigD, polymerase domain protein; PFAM: ATP dependent DNA ligase; DNA primase small subunit; ATP dependent DNA ligase domain protein; KEGG: chu:CHU_2837 ATP-dependent DNA ligase.
 
     0.523
Dfer_1839
KEGG: psp:PSPPH_1192 hypothetical protein.
  
     0.476
Dfer_2536
KEGG: npu:Npun_F5031 outer membrane protein.
  
     0.466
ku
Ku protein; With LigD forms a non-homologous end joining (NHEJ) DNA repair enzyme, which repairs dsDNA breaks with reduced fidelity. Binds linear dsDNA with 5'- and 3'- overhangs but not closed circular dsDNA nor ssDNA. Recruits and stimulates the ligase activity of LigD. Belongs to the prokaryotic Ku family.
 
     0.455
Your Current Organism:
Dyadobacter fermentans
NCBI taxonomy Id: 471854
Other names: D. fermentans DSM 18053, Dyadobacter fermentans DSM 18053, Dyadobacter fermentans str. DSM 18053, Dyadobacter fermentans strain DSM 18053
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.