STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dfer_0267PFAM: oxidoreductase domain protein; KEGG: rca:Rcas_2442 oxidoreductase domain- containing protein. (387 aa)    
Predicted Functional Partners:
Dfer_4760
PFAM: Xylose isomerase domain protein TIM barrel; KEGG: ote:Oter_2882 xylose isomerase domain- containing protein.
  
    0.694
Dfer_4759
PFAM: oxidoreductase domain protein; KEGG: sus:Acid_7126 oxidoreductase domain- containing protein.
  
     0.632
Dfer_0268
PFAM: amidohydrolase; KEGG: ilo:IL0044 amidohydrolase.
       0.625
Dfer_2705
PFAM: Xylose isomerase domain protein TIM barrel; KEGG: ote:Oter_3285 xylose isomerase domain- containing protein.
  
    0.543
Dfer_1429
PFAM: Xylose isomerase domain protein TIM barrel; KEGG: ote:Oter_3285 xylose isomerase domain- containing protein.
  
    0.542
Dfer_0266
KEGG: mfa:Mfla_0527 hypothetical protein.
       0.504
Dfer_5701
PFAM: Myo-inositol catabolism IolB domain protein; KEGG: sus:Acid_1480 myo-inositol catabolism IolB domain-containing protein.
 
  
 0.488
Dfer_5021
PFAM: Xylose isomerase domain protein TIM barrel; KEGG: pat:Patl_2692 twin-arginine translocation pathway signal.
  
    0.457
Dfer_3435
PFAM: Xylose isomerase domain protein TIM barrel; KEGG: tpd:Teth39_0591 xylose isomerase domain- containing protein.
  
    0.446
Dfer_5695
PFAM: thiamine pyrophosphate protein central region; thiamine pyrophosphate protein domain protein TPP- binding; thiamine pyrophosphate protein TPP binding domain protein; KEGG: rxy:Rxyl_1718 thiamine pyrophosphate enzyme, central region; Belongs to the TPP enzyme family.
  
  
 0.427
Your Current Organism:
Dyadobacter fermentans
NCBI taxonomy Id: 471854
Other names: D. fermentans DSM 18053, Dyadobacter fermentans DSM 18053, Dyadobacter fermentans str. DSM 18053, Dyadobacter fermentans strain DSM 18053
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.