STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dfer_0316PFAM: ABC transporter related; ABC transporter transmembrane region; SMART: AAA ATPase; KEGG: chu:CHU_0506 ABC transporter, ATP-binding protein/permease. (607 aa)    
Predicted Functional Partners:
Dfer_2488
PFAM: ABC transporter related; ABC transporter transmembrane region; SMART: AAA ATPase; KEGG: fjo:Fjoh_2404 ABC transporter related.
  
  
 
0.912
Dfer_0314
PFAM: glycosyl transferase family 2; KEGG: gsu:GSU0631 glycosyl transferase, group 2 family protein.
  
    0.775
Dfer_0315
PFAM: glycosyl transferase family 2; KEGG: gsu:GSU0631 glycosyl transferase, group 2 family protein.
  
    0.775
lpxK
Tetraacyldisaccharide 4'-kinase; Transfers the gamma-phosphate of ATP to the 4'-position of a tetraacyldisaccharide 1-phosphate intermediate (termed DS-1-P) to form tetraacyldisaccharide 1,4'-bis-phosphate (lipid IVA).
  
 0.631
dnaK
Chaperone protein DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family.
  
 0.625
Dfer_2381
PFAM: peptidase M28; KEGG: sru:SRU_2730 aminopeptidase.
    
 0.602
adk
Adenylate kinase; Catalyzes the reversible transfer of the terminal phosphate group between ATP and AMP. Plays an important role in cellular energy homeostasis and in adenine nucleotide metabolism; Belongs to the adenylate kinase family.
  
   0.545
Dfer_4910
PFAM: ABC transporter related; peptidase C39 bacteriocin processing; ABC transporter transmembrane region; SMART: AAA ATPase; KEGG: fjo:Fjoh_1164 ABC transporter related.
 
 
  
0.530
Dfer_5250
PFAM: ABC transporter related; peptidase C39 bacteriocin processing; ABC transporter transmembrane region; SMART: AAA ATPase; KEGG: pdi:BDI_2935 ABC transporter ATP-binding protein.
 
 
  
0.523
Dfer_1690
PFAM: ABC transporter related; peptidase C39 bacteriocin processing; ABC transporter transmembrane region; SMART: AAA ATPase; KEGG: pdi:BDI_2935 ABC transporter ATP-binding protein.
 
 
  
0.520
Your Current Organism:
Dyadobacter fermentans
NCBI taxonomy Id: 471854
Other names: D. fermentans DSM 18053, Dyadobacter fermentans DSM 18053, Dyadobacter fermentans str. DSM 18053, Dyadobacter fermentans strain DSM 18053
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.