STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dfer_0317KEGG: sus:Acid_1898 hypothetical protein. (395 aa)    
Predicted Functional Partners:
Dfer_1069
KEGG: chu:CHU_1636 hypothetical protein.
  
     0.682
Dfer_2208
PFAM: RagB/SusD domain protein; KEGG: fjo:Fjoh_3870 RagB/SusD domain-containing protein.
  
     0.661
Dfer_2207
PFAM: TonB-dependent receptor plug; KEGG: bvu:BVU_0389 hypothetical protein.
  
     0.550
Dfer_3041
KEGG: xca:xccb100_3615 putative secreted protein.
  
     0.549
Dfer_4010
KEGG: fjo:Fjoh_1342 hypothetical protein.
  
     0.529
Dfer_3464
Hypothetical protein.
  
     0.489
Dfer_3042
Cellulose synthase (UDP-forming); PFAM: glycosyl transferase family 2; glycoside hydrolase family 2 TIM barrel; KEGG: scl:sce4866 integral membrane glycosyltransferase.
  
     0.476
Dfer_5711
KEGG: chu:CHU_2068 hypothetical protein.
  
     0.464
Dfer_1959
PFAM: DinB family protein; KEGG: aba:Acid345_4547 DinB.
  
     0.449
Dfer_0314
PFAM: glycosyl transferase family 2; KEGG: gsu:GSU0631 glycosyl transferase, group 2 family protein.
       0.439
Your Current Organism:
Dyadobacter fermentans
NCBI taxonomy Id: 471854
Other names: D. fermentans DSM 18053, Dyadobacter fermentans DSM 18053, Dyadobacter fermentans str. DSM 18053, Dyadobacter fermentans strain DSM 18053
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.