STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dfer_0328PFAM: protein of unknown function DUF500; KEGG: smt:Smal_3990 protein of unknown function DUF500. (225 aa)    
Predicted Functional Partners:
Dfer_4626
PFAM: GHMP kinase; GHMP kinase domain protein; KEGG: sus:Acid_6718 GHMP kinase.
    
   0.869
Dfer_5651
PFAM: CsbD family protein; KEGG: fjo:Fjoh_2319 CsbD family protein; Belongs to the UPF0337 (CsbD) family.
  
    0.771
Dfer_0329
KEGG: npu:Npun_R5202 lysyl-tRNA synthetase.
   
   0.676
glmS
Glucosamine/fructose-6-phosphate aminotransferase, isomerizing; Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source.
   
    0.582
Dfer_2772
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: gur:Gura_2358 ABC transporter related.
   
    0.530
Dfer_2771
PFAM: ABC-2 type transporter; KEGG: sfu:Sfum_3355 ABC-2 type transporter.
   
    0.511
Dfer_0327
PFAM: Ferritin Dps family protein; KEGG: prw:PsycPRwf_1541 ferritin, Dps family protein; Belongs to the Dps family.
       0.488
rplQ
TIGRFAM: ribosomal protein L17; PFAM: ribosomal protein L17; KEGG: pgn:PGN_1840 50S ribosomal protein L17.
  
     0.403
Your Current Organism:
Dyadobacter fermentans
NCBI taxonomy Id: 471854
Other names: D. fermentans DSM 18053, Dyadobacter fermentans DSM 18053, Dyadobacter fermentans str. DSM 18053, Dyadobacter fermentans strain DSM 18053
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.