STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dfer_0352PFAM: protein of unknown function DUF303 acetylesterase putative; KEGG: chu:CHU_2139 CHU large protein, SAP or adhesin AidA-related. (665 aa)    
Predicted Functional Partners:
Dfer_3739
KEGG: chu:CHU_3275 hypothetical protein.
  
     0.666
Dfer_4542
KEGG: chu:CHU_1568 hypothetical protein.
  
     0.636
Dfer_3441
KEGG: chu:CHU_1568 hypothetical protein.
  
     0.626
Dfer_5768
TIGRFAM: conserved hypothetical protein; PFAM: protein of unknown function DUF1550; KEGG: chu:CHU_1794 hypothetical protein.
  
     0.610
Dfer_3958
PFAM: Fibronectin type III domain protein; KEGG: cts:Ctha_1991 fibronectin type III domain protein.
  
     0.598
Dfer_3620
KEGG: chu:CHU_3409 hypothetical protein.
  
     0.587
Dfer_2587
KEGG: chu:CHU_1084 hypothetical protein.
  
     0.576
Dfer_3742
KEGG: chu:CHU_0066 hypothetical protein.
  
     0.574
Dfer_0205
PFAM: Radical SAM domain protein; KEGG: chu:CHU_3263 radical SAM family Fe-S oxidoreductase.
  
     0.573
Dfer_4254
KEGG: chu:CHU_1568 hypothetical protein.
  
     0.570
Your Current Organism:
Dyadobacter fermentans
NCBI taxonomy Id: 471854
Other names: D. fermentans DSM 18053, Dyadobacter fermentans DSM 18053, Dyadobacter fermentans str. DSM 18053, Dyadobacter fermentans strain DSM 18053
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.