STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dfer_0366PFAM: protein of unknown function DUF72; KEGG: tte:TTE1750 hypothetical protein. (252 aa)    
Predicted Functional Partners:
Dfer_0365
TIGRFAM: DNA ligase D; DNA polymerase LigD, ligase domain protein; DNA ligase D, 3'-phosphoesterase domain protein; DNA polymerase LigD, polymerase domain protein; PFAM: ATP dependent DNA ligase; DNA primase small subunit; ATP dependent DNA ligase domain protein; KEGG: chu:CHU_2837 ATP-dependent DNA ligase.
 
    0.654
Dfer_5653
PFAM: PHP domain protein; SMART: phosphoesterase PHP domain protein; Helix- hairpin-helix DNA-binding class 1; KEGG: chu:CHU_0081 family X DNA polymerase IV.
 
     0.536
Dfer_0367
Hypothetical protein.
       0.533
Dfer_5577
PFAM: phosphoribosyltransferase; KEGG: sun:SUN_0992 phosphoribosyltransferase.
 
     0.476
Dfer_0370
KEGG: mlo:mlr4646 hypothetical protein.
 
     0.457
Dfer_0134
PFAM: DNA glycosylase/AP lyase, H2TH DNA-binding; KEGG: psa:PST_0858 endonuclease.
     0.456
cobB
PFAM: Silent information regulator protein Sir2; KEGG: chu:CHU_2345 NAD-dependent deacetylase; Belongs to the sirtuin family. Class III subfamily.
      0.442
Your Current Organism:
Dyadobacter fermentans
NCBI taxonomy Id: 471854
Other names: D. fermentans DSM 18053, Dyadobacter fermentans DSM 18053, Dyadobacter fermentans str. DSM 18053, Dyadobacter fermentans strain DSM 18053
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.