STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dfer_0403TIGRFAM: membrane-bound dehydrogenase domain protein; KEGG: rba:RB3322 cytochrome c. (773 aa)    
Predicted Functional Partners:
Dfer_5323
TIGRFAM: cytochrome c oxidase, cbb3-type, subunit I; cytochrome c oxidase, cbb3-type, subunit II; PFAM: cytochrome C oxidase mono-heme subunit/FixO; cytochrome c oxidase subunit I; KEGG: chu:CHU_1138 cytochrome c oxidase, cbb3-type; Belongs to the heme-copper respiratory oxidase family.
  
 
 0.975
Dfer_3476
KEGG: chu:CHU_2212 molybdopterin oxidoreductase, iron-sulfur binding subunit.
  
 
 0.912
Dfer_4620
TIGRFAM: heme-binding protein; PFAM: PBS lyase HEAT domain protein repeat- containing protein; HEAT domain containing protein; KEGG: rba:RB1988 glucose dehydrogenase-B [pyrroloquinoline-quinone] [precursor].
  
     0.667
Dfer_3041
KEGG: xca:xccb100_3615 putative secreted protein.
  
     0.656
Dfer_0404
PFAM: major facilitator superfamily MFS_1; General substrate transporter; KEGG: gdj:Gdia_2219 major facilitator superfamily MFS_1.
       0.623
Dfer_1034
TIGRFAM: heme-binding protein; KEGG: rba:RB24 L-sorbosone dehydrogenase.
  
     0.616
Dfer_2187
PFAM: FAD dependent oxidoreductase; Rieske [2Fe-2S] domain protein; KEGG: chu:CHU_2065 oxidoreductase.
  
 
 0.610
Dfer_5289
PFAM: cytochrome c class I; KEGG: rba:RB9713 large, multifunctional secreted protein.
 
 
 
 0.608
Dfer_4983
KEGG: sus:Acid_1705 signal peptide and transmembrane prediction.
     0.600
Dfer_4136
PFAM: Rieske [2Fe-2S] domain protein; KEGG: mjl:Mjls_3579 Rieske (2Fe-2S) domain- containing protein.
  
 
 0.595
Your Current Organism:
Dyadobacter fermentans
NCBI taxonomy Id: 471854
Other names: D. fermentans DSM 18053, Dyadobacter fermentans DSM 18053, Dyadobacter fermentans str. DSM 18053, Dyadobacter fermentans strain DSM 18053
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.