STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dfer_0521KEGG: mes:Meso_0331 hypothetical protein. (135 aa)    
Predicted Functional Partners:
Dfer_0519
PFAM: protein of unknown function DUF421; KEGG: dra:DR_0048 hypothetical protein.
 
     0.741
Dfer_1506
KEGG: aav:Aave_4018 hypothetical protein.
  
     0.722
Dfer_0520
PFAM: protein of unknown function DUF421; KEGG: dra:DR_0048 hypothetical protein.
 
     0.721
Dfer_1590
KEGG: mxa:MXAN_0241 hypothetical protein.
  
     0.588
Dfer_2532
PFAM: RagB/SusD domain protein; KEGG: fjo:Fjoh_3864 RagB/SusD domain-containing protein.
  
     0.521
Dfer_5582
PFAM: beta-lactamase domain protein; KEGG: smd:Smed_3996 beta-lactamase domain protein.
  
     0.512
Dfer_0816
KEGG: afw:Anae109_1067 hypothetical protein.
  
     0.495
Dfer_1571
KEGG: fjo:Fjoh_4949 hypothetical protein.
  
     0.462
Dfer_4709
PFAM: RagB/SusD domain protein; KEGG: fjo:Fjoh_4646 RagB/SusD domain-containing protein.
  
     0.445
Dfer_2536
KEGG: npu:Npun_F5031 outer membrane protein.
  
     0.444
Your Current Organism:
Dyadobacter fermentans
NCBI taxonomy Id: 471854
Other names: D. fermentans DSM 18053, Dyadobacter fermentans DSM 18053, Dyadobacter fermentans str. DSM 18053, Dyadobacter fermentans strain DSM 18053
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.