STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dfer_0546PFAM: oxidoreductase domain protein; Oxidoreductase domain; KEGG: oih:OB3261 oxidoreductase. (327 aa)    
Predicted Functional Partners:
Dfer_0547
Hypothetical protein.
       0.559
Dfer_0545
KEGG: vfm:VFMJ11_0532 hypothetical protein.
       0.545
Dfer_5695
PFAM: thiamine pyrophosphate protein central region; thiamine pyrophosphate protein domain protein TPP- binding; thiamine pyrophosphate protein TPP binding domain protein; KEGG: rxy:Rxyl_1718 thiamine pyrophosphate enzyme, central region; Belongs to the TPP enzyme family.
 
  
 0.494
Dfer_0543
KEGG: fjo:Fjoh_2373 hypothetical protein.
       0.453
Dfer_0544
PFAM: chaperone DnaJ domain protein; heat shock protein DnaJ domain protein; SMART: heat shock protein DnaJ domain protein; KEGG: bfs:BF3207 putative chaperone.
       0.453
Dfer_4489
PFAM: oxidoreductase domain protein; KEGG: bth:BT_3581 putative dehydrogenase and relate proteins.
  
     0.416
Dfer_5701
PFAM: Myo-inositol catabolism IolB domain protein; KEGG: sus:Acid_1480 myo-inositol catabolism IolB domain-containing protein.
  
  
 0.414
Dfer_1237
PFAM: oxidoreductase domain protein; KEGG: sus:Acid_3799 oxidoreductase domain- containing protein.
  
     0.411
Your Current Organism:
Dyadobacter fermentans
NCBI taxonomy Id: 471854
Other names: D. fermentans DSM 18053, Dyadobacter fermentans DSM 18053, Dyadobacter fermentans str. DSM 18053, Dyadobacter fermentans strain DSM 18053
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